Now showing items 1-3 of 3

  • Genetic relationships among 527 Gram-negative bacterial plasmids 

    Broschat, Shira L.; Zhou, Yunyun; Call, Douglas R. (Elsevier, 2012)
    Plasmids are mosaic in composition with a maintenance “backbone” as well as “accessory” genes obtained via horizontal gene transfer. This horizontal gene transfer complicates the study of their genetic relationships. We ...
  • Using protein clusters from whole proteomes to construct and augment a dendrogram 

    Zhou, Yunyun; Call, Douglas R.; Broschat, Shira L.; Van de Peer, Yves (Advances in Bioinformatics, 2013-01)
    In this paper we present a new ab initio approach for constructing an unrooted dendrogram using protein clusters, an approach that has the potential for estimating relationships among several thousands of species based on ...
  • Whole-proteome analysis of twelve species of Alphaproteobacteria links four pathogens 

    Zhou, Yunyun; Call, Douglas R.; Broschat, Shira L. (Pathogens, 2013-01)
    Thousands of whole-genome and whole-proteome sequences have been made available through advances in sequencing technology, and sequences of millions more organisms will become available in the coming years. This wealth of ...