Browsing Faculty - Engineering and Computer Science by Author "Cilingir, Gokcen"
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ApicoAMP: The first computational model for identifying apicoplast-targeted transmembrane proteins in Apicomplexa
Cilingir, Gokcen; Lau, Audrey O.T.; Broschat, Shira L. (Elsevier, 2013-12)In this work, we develop a method for predicting apicoplast-targeted transmembrane proteins for multiple species of Apicomplexa, whereby several classifiers trained on different feature sets and based on different algorithms ... -
ApicoAP: The first computational model for predicting apicoplast-targeted proteins for multiple species of Apicomplexa
Cilingir, Gokcen; Broschat, Shira L; Lau, Audrey O T (PLoS ONE, 2012-05)Most of the parasites of the phylum Apicomplexa contain a relict prokaryotic-derived plastid called the apicoplast. This organelle is important not only for the survival of the parasite, but its unique properties make it ... -
Automated training for algorithms that learn from genomic data
Cilingir, Gokcen; Broschat, Shira L. (BioMed Research International, 2015-01)Supervised machine learning algorithms are used by life scientists for a variety of objectives. Expert-curated public gene and protein databases are major resources for gathering data to train these algorithms. While these ...