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ApicoAMP: The first computational model for identifying apicoplast-targeted transmembrane proteins in Apicomplexa
In this work, we develop a method for predicting apicoplast-targeted transmembrane proteins for multiple species of Apicomplexa, whereby several classifiers trained on different feature sets and based on different algorithms ...
Using protein clusters from whole proteomes to construct and augment a dendrogram
(Advances in Bioinformatics, 2013-01)
In this paper we present a new ab initio approach for constructing an unrooted dendrogram using protein clusters, an approach that has the potential for estimating relationships among several thousands of species based on ...
Whole-proteome analysis of twelve species of Alphaproteobacteria links four pathogens
Thousands of whole-genome and whole-proteome sequences have been made available through advances in sequencing technology, and sequences of millions more organisms will become available in the coming years. This wealth of ...